MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.24665879638469718
cnr4.778719734579285
efc0.5944579927356832
fber95.24781799316406
fwhmavg3.8542699999999996
fwhmx3.74075
fwhmy4.04721
fwhmz3.77485
icvscsf0.1930981893220242
icvsgm0.4755080163643083
icvswm0.33139379431366756
inumed0.9448355436325073
inurange0.277922546863556
qi10.0
qi20.0010151977119769115
rpvecsf23.076270332929816
rpvegm10.858979435007942
rpvewm17.853810333132635
sizex180
sizey256
sizez256
snrcsf2.443888339788761
snrgm10.45249452068033
snrtotal9.773973185729544
snrwm16.42553669671954
snrdcsf15.938506010951535
snrdgm30.792417736331323
snrdtotal32.79028396638328
snrdwm51.63992815186698
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.0348385970920813
summarybgmad12.686756134033203
summarybgmean52.778751373291016
summarybgmedian51.96168518066406
summarybgn2927606.0
summarybgp0533.099968910217285
summarybgp9575.51643180847168
summarybgstdv13.271771430969238
summarycsfk0.9626695952909778
summarycsfmad133.80482482910156
summarycsfmean313.2169494628906
summarycsfmedian308.650146484375
summarycsfn12083.0
summarycsfp05128.15918579101563
summarycsfp95514.9523071289062
summarycsfstdv126.28947448730469
summarygmk0.11882679610235458
summarygmmad56.06519317626953
summarygmmean595.8043212890625
summarygmmedian596.2970581054688
summarygmn54608.0
summarygmp05500.8169204711914
summarygmp95688.9879974365234
summarygmstdv57.04777908325195
summarywmk1.9474622361324263
summarywmmad43.51424789428711
summarywmmean989.3204345703125
summarywmmedian1000.0103759765625
summarywmn199541.0
summarywmp05854.5672607421875
summarywmp951066.2352294921875
summarywmstdv60.881290435791016
tpmoverlapcsf0.19240304827690125
tpmoverlapgm0.521120548248291
tpmoverlapwm0.5187807083129883
wm2max0.698916777338992

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum5079af77dac38aeb6c2ee467c3e69992
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.