MRIQC: individual T1w report

Summary

Subject ID: 052_ExercisePre.
Date and time: 2018-05-06, 20:24.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.24665879638469718
cnr			4.778719734579285
efc			0.5944579927356832
fber			95.24781799316406
fwhm	avg		3.8542699999999996
fwhm	x		3.74075
fwhm	y		4.04721
fwhm	z		3.77485
icvs	csf		0.1930981893220242
icvs	gm		0.4755080163643083
icvs	wm		0.33139379431366756
inu	med		0.9448355436325073
inu	range		0.277922546863556
qi	1		0.0
qi	2		0.0010151977119769115
rpve	csf		23.076270332929816
rpve	gm		10.858979435007942
rpve	wm		17.853810333132635
size	x		180
size	y		256
size	z		256
snr	csf		2.443888339788761
snr	gm		10.45249452068033
snr	total		9.773973185729544
snr	wm		16.42553669671954
snrd	csf		15.938506010951535
snrd	gm		30.792417736331323
snrd	total		32.79028396638328
snrd	wm		51.63992815186698
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.0348385970920813
summary	bg	mad	12.686756134033203
summary	bg	mean	52.778751373291016
summary	bg	median	51.96168518066406
summary	bg	n	2927606.0
summary	bg	p05	33.099968910217285
summary	bg	p95	75.51643180847168
summary	bg	stdv	13.271771430969238
summary	csf	k	0.9626695952909778
summary	csf	mad	133.80482482910156
summary	csf	mean	313.2169494628906
summary	csf	median	308.650146484375
summary	csf	n	12083.0
summary	csf	p05	128.15918579101563
summary	csf	p95	514.9523071289062
summary	csf	stdv	126.28947448730469
summary	gm	k	0.11882679610235458
summary	gm	mad	56.06519317626953
summary	gm	mean	595.8043212890625
summary	gm	median	596.2970581054688
summary	gm	n	54608.0
summary	gm	p05	500.8169204711914
summary	gm	p95	688.9879974365234
summary	gm	stdv	57.04777908325195
summary	wm	k	1.9474622361324263
summary	wm	mad	43.51424789428711
summary	wm	mean	989.3204345703125
summary	wm	median	1000.0103759765625
summary	wm	n	199541.0
summary	wm	p05	854.5672607421875
summary	wm	p95	1066.2352294921875
summary	wm	stdv	60.881290435791016
tpm	overlap	csf	0.19240304827690125
tpm	overlap	gm	0.521120548248291
tpm	overlap	wm	0.5187807083129883
wm2max			0.698916777338992

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	5079af77dac38aeb6c2ee467c3e69992
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.